RnoEX6015256 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161813442-161817120:-
Coord C1 exon
chr4:161816999-161817120
Coord A exon
chr4:161816743-161816794
Coord C2 exon
chr4:161813442-161813525
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTCACTTTCAACGCTAAGCCT
3' ss Score
1.1
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGGAGGTGAACTTCACAGCTACTGCAGAAGCTTTGCAGTCTCCAGAACTGTGTGGCAATAAGGTGGCAGAAGTGCCAGCCCTTGTACAGAAGGACACTGTAGTGAAGCCCGTAATAGTCGAG
Seq A exon
CCTGAAGGAATTGAGAAGGAACAAACGTACAACACACTGTTATGCCCACAAG
Seq C2 exon
ATGCTGAGTTACAGGAAAATTGGACACTGGATCTTCCAGCCAATGTGGTTGAAGGATCTGCCAGGGCTACACAGTCCGTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'24-31,'24-29,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGGCAATAAGGTGGC
R:
CCTGGCAGATCCTTCAACCAC
Band lengths:
141-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]