DreEX6076127 @ danRer10
Exon Skipping
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21060392-21061186:-
Coord C1 exon
chr15:21061135-21061186
Coord A exon
chr15:21060957-21061040
Coord C2 exon
chr15:21060392-21060568
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTCTCTCTTAGGAA
3' ss Score
13.12
5' ss Seq
TCGGTACAT
5' ss Score
4.33
Exon sequences
Seq C1 exon
GCTGAAGGAGTTGAAAAAATCAAGATTTACAGTTGGTTGCTGTGTCCACAGG
Seq A exon
GAAGCAGAGTCTCGGATGAGGTGACACTGACACTTCCTTCCGATGTGATAAAAGGATCAGTCAGATCTTCTGTTTCAGTACTCG
Seq C2 exon
GCGATATATTGGGTCGTGCACTGCAGAATCTTCATGGATTATTAAAAATGCCTTACGGCTGTGGAGAGCAAAATATTGCTGTTCTTTCTCCCAATATTTACATTCTGCAGTATCTGGAGAACACAAAGCAGCTCACATCAGCCATCCGAGAGAAAGCCAGCGGCTTCCTTAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199-'25-35,'25-33,27-35=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGGTTGCTGTGTCCACA
R:
GATGGCTGATGTGAGCTGCTT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]