DreEX6079799 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19630327-19632484:-
Coord C1 exon
chr23:19632113-19632484
Coord A exon
chr23:19631724-19631928
Coord C2 exon
chr23:19630327-19630414
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAATTTTTATTTCAGTCG
3' ss Score
6.91
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AAACTTCATGGCATCGTCTCAAAATCCGAATCGCAGTGTTTACTCACCCTAATCTTGTTCCAAAAATTACATTTCCTCTGTGAAACACAAAAGGCACTGACAGCCTCAGCATTTACAGCACTTTCACTTGATCTTTCTTCTGTACAATGAAAGTGGAGAAGTGAACATTTGTATCACAGTGAACTGTATTTCTCGTCCTCAAAGCACTCCTGGCGTTCTCTGACAGCGTGCAAAGCACTTCCGACTGTGCATCCATGACGACCGACATGTTGACGGAAATACCGCAGGTGCAACAAACTTGTGTCATTTCGGAGCGAGAAGCTCAAAAGTACCGTTAGATGCACGGATGACCTGTCAGAGCTACGGTAAAAG
Seq A exon
TCGTTGATATGCCGACTTCAGCCGAGGCATTAAAGTCCCAGGAGGTGGATGGTTTGAGGAGGTACAGTGTCCTGCCTCCTATTCCGACCATTCCGGTGCAAGATGGAGGGTCAGAGGCCCTTACCGAGAGCAGACGAGCCGTAAGGAGGAAACTCATGCGACACCGGAGGAGCAAACAACAGCAACAGCAGCTCCAAAATATGAT
Seq C2 exon
AGTTGACAGGGCAATGCAAGCTTTCCTGCATGCCAAACAAGCAAGAACTGCCTCTCCTCCTTCTCCTGAACCACAACTTCCCTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.803 C2=0.633
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTCAGCATTTACAGCA
R:
GAAAGCTTGCATTGCCCTGTC
Band lengths:
298-503
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003104; ELM sequence: KEALNLKLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]