RnoEX0028444 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2380096-2383879:+
Coord C1 exon
chr16:2380096-2380172
Coord A exon
chr16:2380287-2380489
Coord C2 exon
chr16:2383798-2383879
Length
203 bp
Sequences
Splice sites
3' ss Seq
TATAAACTTTCTCTTTGCAGAGT
3' ss Score
10.87
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CAAGTGGCTAGCAGAGCTGTGTTTAGAATTCCTGCCCACTCCTCTCAACTGCCATTCTTTAACCACTACCGCACTTG
Seq A exon
AGTATAGAGTATTTAGATCCTTAGGAGACCAAGATGTCAGATCCTAACAAAACTGCCATTACAGCAGAAAAGGAAGCTTTGAACTTGAAGTTGCCCCCTATTGTTCATCCCCCCAAAAACATAGGTGTTGACACACCAAAACAAAGTGAGTTGCTAAATTACCGAAGATCTAAGGAACAGCAGAAGAAAATCAATCAATTAGT
Seq C2 exon
AATTTCTGCAGCTAAAAAAAGTCTAGATAAAACCCTGGATAAAAGAATCCCCCCGTTACCGGAGCCAGACTTCCCTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.579 C2=0.571
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGCTGTGTTTAGAATTCCT
R:
TTGGAGGGAAGTCTGGCTCC
Band lengths:
148-351
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003104; ELM sequence: KEALNLKLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]