MmuEX6040136 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27512760-27515517:+
Coord C1 exon
chr14:27512760-27512783
Coord A exon
chr14:27512899-27513101
Coord C2 exon
chr14:27515436-27515517
Length
203 bp
Sequences
Splice sites
3' ss Seq
TATGAACTTTTTCTTTTCAGAGT
3' ss Score
9.73
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATTCTTTAACTACTACCATACTTG
Seq A exon
AGTATAGTGTGTTTTAATACTCAGGAGACCAAGATGTCAGATCCTAACAAAACTGCCATTGCAGCAGAAAAGGAAGCTTTGAACTTGAAGTTGCCCCCCATTGTTCAACCCCCCAAAAACATAGGGGTCGACACACCAAAACAGAGTGAGCTGCTAAAGTACAGACGGTCTAAGGAGCAGCAGAAGAAGATCAATCAGTTAGT
Seq C2 exon
AATTTCTGGAGCTAAAAAAAGTCTGGACAAAACCCTGGATAAAAGAATACCTCCATTACCAGAGCCAGACTTCCCTCCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.561 C2=0.607
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003104; ELM sequence: KEALNLKLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: