GgaEX1001292 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8699537-8701557:-
Coord C1 exon
chr12:8701457-8701557
Coord A exon
chr12:8700336-8700499
Coord C2 exon
chr12:8699537-8699627
Length
164 bp
Sequences
Splice sites
3' ss Seq
CATTTTTGTTATGCTTTAAGATG
3' ss Score
5.21
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CGGCTTCAGCACAAAGCTGCCTTCTCTTCGGGACTGAAACCCACAGGAGAACTCTTCACGTCCCCGTAATGTCTGGAAAGGGTGTCGGTTCGGCACATCAG
Seq A exon
ATGCCACACTCAGATGGAGCAGCTTCCAATAGAAAGACTTTGAGAAGTTTGTTTCCTCCCGTTGTTCTGCCTTCAGCGGTTGCATCAGATACATCACCATTACAGAGTAAGCTGCTGGCGTACCGAAGATGCAAAGAACAGCAAACAGCGCTTAATCAGTTACT
Seq C2 exon
AGTTGATCGAGCTTTACAAGTCTATTCTGAATCCATGGAGGAAAAGCATCAAAGAGGTTCTGCACCTCCAGTCCCAGAACTACCTGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.789
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCTGCCTTCTCTTCGG
R:
GCAGGTAGTTCTGGGACTGGA
Band lengths:
178-342
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003104; ELM sequence: KEALNLKLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]