DreEX6079804 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19626120-19626786:-
Coord C1 exon
chr23:19626598-19626786
Coord A exon
chr23:19626355-19626508
Coord C2 exon
chr23:19626120-19626211
Length
154 bp
Sequences
Splice sites
3' ss Seq
AATCCTGCCTAAATCCACAGAAA
3' ss Score
7.24
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTGAAGGCTCTAGTTGAAAAAAGCGTGACAGCATTTGTGAGCTTGTTCGATCCTCTTAACATCAACAAACTCCCTCTGTTCAAGATGGACTTGATATTTGATGATGAGAAGATGGACTTTTATCCTAATTTTCATGATCTAGAGCTGGCTGTGCTTGAAATTGCTAACCTGATTAGCAATACTATGCAG
Seq A exon
AAAGTGCAGACGATCCAGTCATGGCTTGCAGAGGGCAGCATTTCTGTAATAGATGCCAAACTCTCAGATCATGTTCAGGTATGGGCTCAGACCACTCTTAGGAATGCTGTAAGGATGAACTTAGAAGGACCTGCCAAACACTTCCAGAGCTATG
Seq C2 exon
TTGACAGGTATGACTGGTTAGTCAATGGGACGGCACAGGCTCAAGTGGACAAATTAATGGAAGAAGAGCATTCTTTTGATGAGCACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGACAGCATTTGTGAGCT
R:
TGTGTGCTCATCAAAAGAATGCT
Band lengths:
256-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]