RnoEX0028469 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2389552-2391993:+
Coord C1 exon
chr16:2389552-2389740
Coord A exon
chr16:2390588-2390744
Coord C2 exon
chr16:2391902-2391993
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTTTGTTTCTGTTAGACT
3' ss Score
5.92
5' ss Seq
ACGGTACAT
5' ss Score
6.53
Exon sequences
Seq C1 exon
CTAAAAGATCTCTTATGGAGAACTGTAGAAGAATTTGTAAGACTCTTTGATTCAAGATATATACTCAGGCTTCCAATATTCAAGATGGAATTGACATTTGATGACGATAAAATGGAATTTTATCCCACCTTTCAAGATTTGGAAGACGTTGTCTTGGGTTTGATAGAACGGATATCTGAAACTTTGCAG
Seq A exon
ACTGTCCAAACAGTGCCTTCTTGGCTGTCAGGAACTACAGCGCCTGTCAATCTTGATACAGAACTTCCAGAACATGTGATGTACTGGGCTCTCAGTACACTGAGGATAGCAGTACATCAGAACTTAGAAGGTGTAAGAGCACATTATAAAACATACG
Seq C2 exon
TTACAAACTACAACTGGCTCCTTGATGGGACAGCAACAAAGATGATAGAGAGATTTCAGTCAGAAAACCATACTTTTGATGAATACACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTATGGAGAACTGTAGAAGAAT
R:
TGGTTTTCTGACTGAAATCTCTCT
Band lengths:
251-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]