DreEX6081102 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27437120-27437581:-
Coord C1 exon
chr23:27437411-27437581
Coord A exon
chr23:27437265-27437326
Coord C2 exon
chr23:27437120-27437177
Length
62 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCCTTTCCTCTCAGGGC
3' ss Score
11.85
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCGCGCAATGTGAACCTGTCGTGTGTGCGGAGCTGTGTGGTCATAGCTGAAGAAAGGCCTCGACTTGCCCTCACACAGTCCTTCTCCAAGCTCTTCAAAGATCTGGGCCTTTCTCCACGTGCAGTCAGCACCGCTTTCGGCTCCAGAGTCAACCTGGCCATCTGTCTACAG
Seq A exon
GGCACTGCTGGTCCAGACCCGTCCACTGTTTATGTAGACATGAAGTCCCTCCGTCATGACAG
Seq C2 exon
AGTCAGGCTGGTGGAGAGAGGAGCTCCTCAGAGTCTGCCGCTGATGGAGTCTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'42-37,'42-36,43-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.050
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(4.2=100)
C2:
PF0050123=AMP-binding=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAGGCCTCGACTTGC
R:
CTCCTCTCTCCACCAGCCTG
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]