MmuEX0014707 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100203132-100209756:+
Coord C1 exon
chr15:100203132-100203302
Coord A exon
chr15:100205083-100205144
Coord C2 exon
chr15:100209579-100209756
Length
62 bp
Sequences
Splice sites
3' ss Seq
GCTGGTTTGTTCTTCTTTAGGGA
3' ss Score
8.76
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACCAGAGGGATCAATCTTTCTTGCATCCGGACCTGTGTGGTGGTGGCAGAGGAGCGGCCCCGTGTCAGCCTTCAGCAGTCCTTCTCCAAGCTCTTCAAAGACATCGGTCTGTCCCCTCGAGCTGTCAGCACCACTTTTGGATCCAGAGTCAATGTAGCAATATGTTTACAG
Seq A exon
GGAACCTCAGGGCCGGATCCAACAACTGTGTATGTGGATCTGAAGTCGCTGAGACATGACAG
Seq C2 exon
ATCTGGGTGAATAGCCCCCATACCGCCAGTGGCTACTATACCATCTACGACAGCGAGACTCTTCAAGCTGATCATTTCAATACCCGTCTGAGCTTTGGAGATGCTGCCCAGACACTCTGGGCCCGGACAGGATACCTCGGGTTTGTCCGCAGGACTGAGCTCACTGCAGCCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026_MULTIEX2-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(4.2=100)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGGTCTGTCCCCTCGAG
R:
GCTTGAAGAGTCTCGCTGTCG
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types