DreEX6081197 @ danRer10
Exon Skipping
Gene
ENSDARG00000018179 | acvrl1
Description
activin A receptor type II-like 1 [Source:ZFIN;Acc:ZDB-GENE-021003-1]
Coordinates
chr23:27918285-27920966:-
Coord C1 exon
chr23:27920867-27920966
Coord A exon
chr23:27918737-27918883
Coord C2 exon
chr23:27918285-27918560
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCTCTGATTGCTTCTGGTAGGTA
3' ss Score
5.37
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GATATCTTTGATGAGTTTTGTACATCGGGCAGTGGCACTGGTCTGCCCTATCTGGTGCAGAGGACCATGGCGCGACAGATCTCTCTGGTTGAGTGTGTTG
Seq A exon
GTAAAGGCCGTTATGGTGAGGTATGGAGAGGCACCTGGATGGGAGAAAGTGTGGCTGTCAAGATTTTCTCCTCTCGTGATGAGCAGTCTTGGTTTCGAGAGACTGAAATCTACAACACGGTCCAACTAAGGCATGAAAACATCTTGG
Seq C2 exon
GCTTCATAGCATCAGACATGACGTCTAAAAACTCCAGCACTCAACTGTGGCTGGTCACACATTTCCACGAGTTGGGCTCCCTCTATGACTTCCTGCAGTACAGCACGCTGGACCCGGAGGGCTGTCTGCGCATGTGCCTGTCCATCGCCAGCGGCCTCGTGCACCTCCACACAGAGATCCTCAGCACACAAGGCAAACCAGCCATCGCACACAGAGACCTGAAGAGCCGCAATATTCTGGTGAAGAGAAATGGCCAGTGCTGCATTGCAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018179-'10-7,'10-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
PF0006920=Pkinase=FE(17.0=100)
C2:
PF0006920=Pkinase=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATCTGGTGCAGAGGACCA
R:
GCCTTGTGTGCTGAGGATCTC
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]