RnoEX0006485 @ rn6
Exon Skipping
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142778193-142779659:+
Coord C1 exon
chr7:142778193-142778292
Coord A exon
chr7:142779030-142779176
Coord C2 exon
chr7:142779384-142779659
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTGGCCACGGATTAGGAA
3' ss Score
1.37
5' ss Seq
TAGGCAAGC
5' ss Score
1.14
Exon sequences
Seq C1 exon
GACTTCCTGGTCAGCGACTGTACCACAGGCAGCGGCTCAGGGCTACCCTTCTTGGTGCAGAGGACAGTAGCGCGACAGGTTGCACTGGTGGAGTGTGTGG
Seq A exon
GAAAGGGCCGATATGGCGAGGTGTGGCGCGGTTCGTGGCATGGCGAGAGTGTGGCGGTCAAGATTTTCTCCTCACGAGATGAGCAGTCCTGGTTCCGGGAGACAGAGATCTACAACACAGTTCTGCTTAGACACGACAACATCCTAG
Seq C2 exon
GCTTCATCGCCTCCGACATGACCTCGCGGAACTCCAGCACGCAGCTGTGGCTTATCACCCACTACCACGAGCATGGCTCCCTCTATGACTTTCTGCAGAGGCAGACGCTGGAGCCCCAGTTGGCCCTGAGGCTGGCTGTGTCCGCGGCCTGCGGCCTGGCGCACCTGCATGTAGAGATCTTTGGCACTCAAGGCAAACCAGCCATCGCCCATCGTGACCTCAAGAGCCGCAACGTGCTGGTCAAGAGCAACTTGCAGTGTTGCATTGCAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
PF0006920=Pkinase=FE(17.0=100)
C2:
PF0006920=Pkinase=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTGCAGAGGACAGTAGC
R:
TGGTTTGCCTTGAGTGCCAAA
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]