GgaEX1006201 @ galGal4
Exon Skipping
Gene
ENSGALG00000012551 | ACVR1
Description
Activin receptor type-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90ZK6]
Coordinates
chr7:35767463-35771736:-
Coord C1 exon
chr7:35771637-35771736
Coord A exon
chr7:35769796-35769942
Coord C2 exon
chr7:35767463-35767738
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCCTCCCTGACCAGGAA
3' ss Score
10.13
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GATTTATTGGACCATTCCTGCACATCTGGAAGTGGTTCTGGACTTCCATTCTTGGTGCAAAGAACAGTGGCTCGCCAGATCACGCTTGTGGAGTGTGTAG
Seq A exon
GAAAGGGCCGTTATGGAGAAGTCTGGAGGGGTCAGTGGCAAGGAGAGAATGTTGCTGTGAAGATCTTCTCTTCTAGGGATGAAAAATCCTGGTTCAGGGAAACTGAATTGTATAACACTGTGTTGCTGCGGCATGAAAACATTTTAG
Seq C2 exon
GTTTTATTGCATCCGATATGACTTCCAGAAACTCTAGCACCCAGCTGTGGCTAATTACTCACTACCACGAGATGGGGTCTTTGTATGACTATCTGCAGCTCACCACCCTGGACACTGTCAGCTGCCTGCGGATAGTACTGTCCATAGCCAGCGGCCTTGCACATTTGCACATAGAGATATTTGGAACGCAGGGGAAGCCTGCCATTTCTCATCGGGACTTGAAGAGCAAAAATATCCTTGTTAAGAAAAATGGACAGTGCTGCATAGCAGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012551-'9-11,'9-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
PF0006920=Pkinase=FE(17.0=100)
C2:
PF0006920=Pkinase=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGCAAAGAACAGTGGCT
R:
GCTTCCCCTGCGTTCCAAATA
Band lengths:
247-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]