MmuEX6101414 @ mm10
Exon Skipping
Gene
ENSMUSG00000026836 | Acvr1
Description
activin A receptor, type 1 [Source:MGI Symbol;Acc:MGI:87911]
Coordinates
chr2:58462881-58474272:-
Coord C1 exon
chr2:58474173-58474272
Coord A exon
chr2:58468514-58468660
Coord C2 exon
chr2:58462881-58463156
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTTTGCTGTCCACAGGGA
3' ss Score
11.03
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAACTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTCCTGGTACAGAGAACGGTGGCTCGCCAGATAACCCTGTTGGAGTGTGTCG
Seq A exon
GGAAGGGCCGGTATGGAGAAGTATGGAGGGGCAGCTGGCAAGGCGAAAATGTCGCTGTGAAGATCTTCTCCTCCCGAGACGAGAAGTCATGGTTCAGGGAGACGGAATTGTACAACACTGTGATGTTGAGGCATGAAAATATCTTAG
Seq C2 exon
GTTTCATCGCTTCAGACATGACCTCCAGACACTCCAGTACCCAGCTGTGGCTCATCACACATTACCATGAAATGGGATCGTTGTATGACTACCTTCAGCTCACTACTCTGGATACGGTTAGCTGCCTTCGGATTGTACTGTCCATAGCCAGCGGCCTTGCCCATTTGCACATAGAGATATTTGGGACCCAAGGGAAGTCCGCCATTGCCCATCGAGATCTGAAGAGCAAAAACATCCTGGTGAAGAAGAATGGACAGTGCTGCATAGCAGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026836-'29-14,'29-13,32-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
PF0006920=Pkinase=FE(17.0=100)
C2:
PF0006920=Pkinase=FE(31.9=100)
Main Skipping Isoform:
ENSMUST00000090935fB5344
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCAGATAACCCTGTTGGA
R:
GCTCTTCAGATCTCGATGGGC
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types