RnoEX0006446 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44448309-44459284:-
Coord C1 exon
chr3:44459185-44459284
Coord A exon
chr3:44453465-44453611
Coord C2 exon
chr3:44448309-44448584
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTGCTCTCCATAGGGA
3' ss Score
11.45
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAATTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGTCG
Seq A exon
GGAAGGGCCGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAGGCGAAAATGTTGCTGTGAAGATCTTCTCCTCCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGAATTGTACAACACGGTGATGCTGAGGCATGAGAATATCTTAG
Seq C2 exon
GTTTCATTGCTTCAGACATGACCTCTAGACACTCCAGTACCCAGCTGTGGCTCATTACACATTACCACGAAATGGGATCGTTGTATGACTACCTTCAGCTCACCACTCTGGACACGGTTAGCTGCCTTCGGATCGTGTTGTCCATAGCCAGCGGCCTTGCACACTTGCACATAGAGATATTTGGGACCCAGGGGAAGTCTGCCATCGCCCACCGAGATCTAAAGAGCAAAAACATCCTCGTGAAGAAGAACGGACAGTGCTGCATAGCAGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033-'16-14,'16-12,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
PF0006920=Pkinase=FE(17.0=100)
C2:
PF0006920=Pkinase=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTCGACAGATAACCCT
R:
TTAGATCTCGGTGGGCGATGG
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]