DreEX6083560 @ danRer10
Exon Skipping
Gene
ENSDARG00000044776 | clic3
Description
chloride intracellular channel 3 [Source:ZFIN;Acc:ZDB-GENE-010507-2]
Coordinates
chr21:13568919-13571269:-
Coord C1 exon
chr21:13571160-13571269
Coord A exon
chr21:13569183-13569308
Coord C2 exon
chr21:13568919-13569025
Length
126 bp
Sequences
Splice sites
3' ss Seq
TATGTCGTCTTTCTTGCTAGAGC
3' ss Score
8.4
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCAAGCGATGATGGTGAAAGTGTTGGTAACTGTCCGTTTTGTCAGCGACTCTTTATGATACTCTGGCTGAAAGGAGTCAACTTCACCCTCACCACTGTGGACATGAAGAG
Seq A exon
AGCTCCAGAGGTATTAAAGGACCTGGCTCCAGGTTCTCAGCCCCCTTTCCTCATTTATAATGGAGAGGTGCGCACTGACACCAACAAGATTGAGGAGTTTCTGGAAGACACCCTTGCTCCCCCACA
Seq C2 exon
ATATCCCAAGTTATGCTGCCGCTATAAGGAGTCTAACACGGCAGGCGATGACATCTTTCATAAATTCTCTGCATATATCAAAAATCCCAATCCTGGACTCAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044776-'6-8,'6-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(13.8=44.2)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCGATGATGGTGAAAGTG
R:
TGTCATTGAGTCCAGGATTGGG
Band lengths:
217-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]