BtaEX0009230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015085 | CLIC3
Description
Bos taurus chloride intracellular channel 3 (CLIC3), mRNA. [Source:RefSeq mRNA;Acc:NM_001100301]
Coordinates
chr11:106229806-106230337:+
Coord C1 exon
chr11:106229806-106229915
Coord A exon
chr11:106229988-106230113
Coord C2 exon
chr11:106230231-106230337
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCCTCATGCCCACAGGTC
3' ss Score
11.02
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
GCCAGTGAGGACGGCGAGAGTGTGGGCCACTGCCCCTCCTGCCAGAGGCTCTTCATGATTCTGCTTCTCAAGGGCGTGCCCTTCACACTCACCACCGTGGACACCCGCAG
Seq A exon
GTCCCCGGAGGTGCTGAAGGACTTCGCCCCAGGCTCCCAGCTGCCCATCCTGCTCTGCGACGGCGACGCCAAAACCGACACGCTGCAGATCGAGGAGTTTCTGGAGGAGACGCTGGGGCCCCCAGA
Seq C2 exon
ATTCCCCAGCTTGGCGCCCAGATACAGGGAGTCTACCGCAGCGGGCAACGACGTCTTTCACAAGTTCTCCGCCTTCATCAAGAACCCAGTGCCCGCACAGGACGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015085-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.189
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(9.2=27.9)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGAGGACGGCGAG
R:
CTGTGCGGGCACTGGGTT
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development