HsaEX6064142 @ hg38
Exon Skipping
Gene
ENSG00000169583 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr9:136994930-136995747:-
Coord C1 exon
chr9:136995648-136995747
Coord A exon
chr9:136995442-136995567
Coord C2 exon
chr9:136994930-136995292
Length
126 bp
Sequences
Splice sites
3' ss Seq
CACCCCGCTGCTGCCCGCAGGTC
3' ss Score
9.99
5' ss Seq
CGAGTGAGA
5' ss Score
3.85
Exon sequences
Seq C1 exon
ACGGGGAGAGCGTGGGTCACTGCCCCTCCTGCCAGCGGCTCTTCATGGTCCTGCTCCTCAAGGGCGTACCTTTCACCCTCACCACGGTGGACACGCGCAG
Seq A exon
GTCCCCGGACGTGCTGAAGGACTTCGCCCCCGGCTCGCAGCTGCCCATCCTGCTCTATGACAGCGACGCCAAGACAGACACGCTGCAGATCGAGGACTTTCTGGAGGAGACGCTGGGGCCGCCCGA
Seq C2 exon
CTTCCCCAGCCTGGCGCCTCGTTACAGGGAGTCCAACACCGCCGGCAACGACGTTTTCCACAAGTTCTCCGCGTTCATCAAGAACCCGGTGCCCGCGCAGGACGAAGGTGAAGCGGGGTCAGGGGGTCGGGTGCCCAGGCGGGAGGGCGCCCTGGGCCTGGTCCTCACCGCGCCGCCTGCCCCCTAGCCCTGTACCAGCAGCTGCTGCGCGCCCTCGCCAGGCTGGACAGCTACCTGCGCGCGCCCCTGGAGCACGAGCTGGCGGGGGAGCCGCAGCTGCGCGAGTCCCGCCGCCGCTTCCTGGACGGCGACAGGCTCACGCTGGCCGACTGCAGCCTCCTGCCCAAGCTGCACATCGTCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169583-'3-5,'3-2,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(11.2=34.9)
C2:
PF134101=GST_C_2=FE(43.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATGGTCCTGCTCCTCA
R:
GTACAGGGCTAGGGGGCAG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains