HsaEX6064142 @ hg19
Exon Skipping
Gene
ENSG00000169583 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:2064]
Coordinates
chr9:139889638-139890209:-
Coord C1 exon
chr9:139890100-139890209
Coord A exon
chr9:139889894-139890019
Coord C2 exon
chr9:139889638-139889744
Length
126 bp
Sequences
Splice sites
3' ss Seq
CACCCCGCTGCTGCCCGCAGGTC
3' ss Score
9.99
5' ss Seq
CGAGTGAGA
5' ss Score
3.85
Exon sequences
Seq C1 exon
GCGAGTGAGGACGGGGAGAGCGTGGGTCACTGCCCCTCCTGCCAGCGGCTCTTCATGGTCCTGCTCCTCAAGGGCGTACCTTTCACCCTCACCACGGTGGACACGCGCAG
Seq A exon
GTCCCCGGACGTGCTGAAGGACTTCGCCCCCGGCTCGCAGCTGCCCATCCTGCTCTATGACAGCGACGCCAAGACAGACACGCTGCAGATCGAGGACTTTCTGGAGGAGACGCTGGGGCCGCCCGA
Seq C2 exon
CTTCCCCAGCCTGGCGCCTCGTTACAGGGAGTCCAACACCGCCGGCAACGACGTTTTCCACAAGTTCTCCGCGTTCATCAAGAACCCGGTGCCCGCGCAGGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169583-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.189
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(11.2=34.9)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGAGGACGGGGAGAG
R:
GGCACCGGGTTCTTGATGAA
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)