MmuEX6099546 @ mm10
Exon Skipping
Gene
ENSMUSG00000015093 | Clic3
Description
chloride intracellular channel 3 [Source:MGI Symbol;Acc:MGI:1916704]
Coordinates
chr2:25457661-25458221:+
Coord C1 exon
chr2:25457661-25457770
Coord A exon
chr2:25457849-25457974
Coord C2 exon
chr2:25458115-25458221
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTGGTGTTCACAGGGC
3' ss Score
8.74
5' ss Seq
TGAGTGAGC
5' ss Score
3.38
Exon sequences
Seq C1 exon
GCCAGTGAGGATGGCGAGAGCGTAGGACACTGCCCTTCCTGTCAGCGGCTCTTCATGGTCCTACTCCTCAAGGGTGTGCCCTTCACACTCACCACAGTGGACACTCGAAG
Seq A exon
GGCATTGGATGTGCTGAAGGACTTCGCACCAGGCTCACAGCTGCCCATCCTGCTGTACGATGGGGATGTCAAGACAGACACACTGCAGATCGAGGAGTTTCTGGAGGAGACGTTGGGGCCACCTGA
Seq C2 exon
CTTCCCTAGCCTGGCACCCAGGTACAGGGAGTCCAACACAGCGGGCAATGACATCTTCCACAAGTTCTCTGCCTTCATCAAGAACCCAGTGCCTACACAGGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015093-'2-8,'2-2,4-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.189
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(9.2=27.9)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGAGGATGGCGAGAG
R:
CTGTGTAGGCACTGGGTTCTT
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types