DreEX6087575 @ danRer10
Exon Skipping
Gene
ENSDARG00000103641 | CABZ01085241.1
Description
NA
Coordinates
chr10:16316294-16319661:+
Coord C1 exon
chr10:16316294-16316446
Coord A exon
chr10:16316534-16316599
Coord C2 exon
chr10:16319536-16319661
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTTATTTTGTGTTTTCAGCAG
3' ss Score
8.52
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
ACACCAGAGAGAGCTTCTGTTTCACACGCTTTGAGAACAGCAAGTGCTCTGTCCCGCAGGCGTTTAACACCACCAAAGCCAAGTGCTGCTGTAGTATCATGGCAAAGGAGGGCTGGGGCGACCCGTGTGAGCTGTGCCCTAAAGAACATGATG
Seq A exon
CAGCATTTCAGGATCTGTGCCCATTTGGTCATGGGATCATTCCTGGTGTTGGGGACACACGTGTAG
Seq C2 exon
ATTTAAACGAGTGTGTGGAGAATCCAGAGATCTGTGTAAACGGACGCTGCATCAACATGGATGGTTCCTTTCGCTGTGAGTGTCCAGCAGGGTACACTCTTGACTACACAGGAACACATTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103641-'4-7,'4-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=73.1)
A:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTGAGAACAGCAAGTGC
R:
TTGATGCAGCGTCCGTTTACA
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]