DreEX6087605 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16446214-16447895:-
Coord C1 exon
chr10:16447770-16447895
Coord A exon
chr10:16446463-16446690
Coord C2 exon
chr10:16446214-16446339
Length
228 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTTGTCCAAACAGATG
3' ss Score
9.74
5' ss Seq
AAGGTCAAA
5' ss Score
1.82
Exon sequences
Seq C1 exon
ATGTGAATGAATGTGAGGTGTTTCCTGGTGTGTGTCACAATGGACACTGTGTGAACACTAGAGGCTCATTTAAATGTCAGTGCCCAGAAAGCCTCACACTGGATGTCACTGGACGCCTCTGTGTTG
Seq A exon
ATGTTCGTTCGGAGCCGTGCTTTCTTACTTACGAAGAAGATGTGTGTACACAGCCGGTACCAGGACGCTTCCGCATGGACATGTGTTGCTGTACGGTGGGTTTGGCTTGGGGCAAAGATTGTGACTTATGTCCTGAGCCTGGTACTCGGCAGTTTGACACCCTGTGCCCAAGAGGACCAGGCTTCGCCAACAAAGGAGACGTTCTCACTGGCAGAGCTGTCTATAAAG
Seq C2 exon
ATATCAATGAGTGCAAAGTTTTCCAAAGCATTTGTGTCCATGGGAAATGTCGGAACACCATTGGGAGCTTCAGATGTCGCTGTGATAGTGGATTTGCACTGGATACCAATGAGAAAAACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'26-34,'26-32,29-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAATGAATGTGAGGTGTTTCC
R:
CTGTGCAGTTTTTCTCATTGGT
Band lengths:
252-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]