RnoEX6058845 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53136242-53140589:-
Coord C1 exon
chr18:53140464-53140589
Coord A exon
chr18:53136871-53137098
Coord C2 exon
chr18:53136242-53136367
Length
228 bp
Sequences
Splice sites
3' ss Seq
CATGTGCGCTCTCCATGCAGATG
3' ss Score
12.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACGTTAATGAGTGCGAGGTGTTTCCTGGCGTCTGTCCAAATGGACGCTGTGTCAACAACAAAGGCTCTTTCCACTGTGAATGCCCTGAAGGCCTTACTCTGGATGGCACAGGCCGGGTGTGTCTGG
Seq A exon
ATGTCCGCATGGAGCACTGCTTCCTGAAGTGGGATGAGGATGAGTGCGTCCACCCCGTCCCCGGGAAGTTCCGCATGGACGCCTGCTGCTGTGCGGTCGGGGCGGCTTGGGGCACAGAGTGTGAAGAGTGTCCCAAACCTGGCACCAAGGAATATGAGACCCTGTGTCCCCGGGGCCCCGGCTTTGCTAACAGAGGGGACATCCTCACTGGGCGTCCATTTTACAAAG
Seq C2 exon
ATATCAACGAGTGCAAGGCCTTTCCTGGGATGTGCACCTATGGGAAGTGTAGAAACACAATCGGAAGCTTCAAGTGTCGTTGCAACAGTGGCTTTGCCCTGGACATGGAGGAGAGGAACTGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTAATGAGTGCGAGGTGT
R:
CAGTACAGTTCCTCTCCTCCA
Band lengths:
252-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]