RnoEX6058844 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53136871-53141093:-
Coord C1 exon
chr18:53141043-53141093
Coord A exon
chr18:53140464-53140589
Coord C2 exon
chr18:53136871-53137098
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCCCCCCCCCACAGACG
3' ss Score
12.82
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATGCAGCTTGCCCGAGAGGGTTCGCCAGGATCAAAGGTGTGACCTGCGAAG
Seq A exon
ACGTTAATGAGTGCGAGGTGTTTCCTGGCGTCTGTCCAAATGGACGCTGTGTCAACAACAAAGGCTCTTTCCACTGTGAATGCCCTGAAGGCCTTACTCTGGATGGCACAGGCCGGGTGTGTCTGG
Seq C2 exon
ATGTCCGCATGGAGCACTGCTTCCTGAAGTGGGATGAGGATGAGTGCGTCCACCCCGTCCCCGGGAAGTTCCGCATGGACGCCTGCTGCTGTGCGGTCGGGGCGGCTTGGGGCACAGAGTGTGAAGAGTGTCCCAAACCTGGCACCAAGGAATATGAGACCCTGTGTCCCCGGGGCCCCGGCTTTGCTAACAGAGGGGACATCCTCACTGGGCGTCCATTTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'17-21,'17-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.0=33.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGTTCGCCAGGATCAAA
R:
AGGATGTCCCCTCTGTTAGCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]