DreEX0032242 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16446463-16448055:-
Coord C1 exon
chr10:16448005-16448055
Coord A exon
chr10:16447770-16447895
Coord C2 exon
chr10:16446463-16446690
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTCTCCCTGTGTAGATG
3' ss Score
11.97
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
Exon sequences
Seq C1 exon
ATCTAGTGTGCGAACGAGGATTTGCTCAGTCAAGAGGGGCTTCATGTGAAG
Seq A exon
ATGTGAATGAATGTGAGGTGTTTCCTGGTGTGTGTCACAATGGACACTGTGTGAACACTAGAGGCTCATTTAAATGTCAGTGCCCAGAAAGCCTCACACTGGATGTCACTGGACGCCTCTGTGTTG
Seq C2 exon
ATGTTCGTTCGGAGCCGTGCTTTCTTACTTACGAAGAAGATGTGTGTACACAGCCGGTACCAGGACGCTTCCGCATGGACATGTGTTGCTGTACGGTGGGTTTGGCTTGGGGCAAAGATTGTGACTTATGTCCTGAGCCTGGTACTCGGCAGTTTGACACCCTGTGCCCAAGAGGACCAGGCTTCGCCAACAAAGGAGACGTTCTCACTGGCAGAGCTGTCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'25-32,'25-29,26-32
Average complexity
S
Mappability confidence:
90%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.0=33.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0068312=TB=WD(100=65.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAACGAGGATTTGCTCAG
R:
GAACGTCTCCTTTGTTGGCGA
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]