MmuEX6001698 @ mm9
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58236266-58240428:-
Coord C1 exon
chr18:58240378-58240428
Coord A exon
chr18:58239800-58239925
Coord C2 exon
chr18:58236266-58236493
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCATTCTCCCCCCTACAGACG
3' ss Score
9.54
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATGCAGCTTGCCCAAGAGGGTTTGCCAGGATCAAAGGTGTGACTTGCGAAG
Seq A exon
ACGTTAATGAATGCGAGGTGTTTCCTGGCGTCTGTCCAAATGGACGCTGTGTCAACAGCAAAGGCTCTTTCCACTGTGAATGCCCTGAAGGTCTTACTCTGGATGGTACCGGCCGGGTGTGTTTGG
Seq C2 exon
ATATCCGTATGGAGCACTGCTTCCTGAAGTGGGATGAGGATGAGTGCATCCACCCTGTCCCTGGGAAGTTCCGCATGGACGCCTGCTGCTGTGCAGTCGGGGCAGCTTGGGGCACAGAGTGTGAAGAATGTCCTAAGCCTGGCACCAAGGAATATGAGACCCTGTGCCCGCGGGGCCCAGGCTTTGCTAACAGAGGGGACATCCTCACTGGGCGTCCATTTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.0=33.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGGGTTTGCCAGGATC
R:
AGGATGTCCCCTCTGTTAGCA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: