BtaEX6039530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26847454-26851473:+
Coord C1 exon
chr7:26847454-26847504
Coord A exon
chr7:26847969-26848094
Coord C2 exon
chr7:26851246-26851473
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTCATTTCCCTGCAGACG
3' ss Score
10.42
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATACAGCTTGCCCAAGAGGGTTTGCCAGGATAAAAGGTGTTACTTGTGAAG
Seq A exon
ACGTTAATGAATGTGAGGTGTTTCCTGGCGTTTGCCCAAATGGACGGTGTGTCAACAGCAAAGGATCTTTTCATTGTGAGTGCCCTGAAGGCCTTACATTGGATGGAACTGGCCGTGTGTGTTTGG
Seq C2 exon
ATATCCGTATGGAGCAGTGTTACTTGAAGTGGGATGAGGACGAATGCATCCATCCTGTACCTGGGAAGTTCCGCATGGATGCCTGCTGTTGTGCGGTCGGAGCAGCTTGGGGCACTGAGTGTGAGGAGTGCCCCAAACTTGGCACCAAAGAGTATGAGACCCTGTGCCCCCGGGGGCCTGGCTTTGCTAACAGAGGGGATGTCCTTACCGGGAGGCCGTTTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'59-58,'59-57,60-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(17.1=38.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGGGTTTGCCAGGATA
R:
CGGTAAGGACATCCCCTCTGT
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]