DreEX6087614 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16403224-16413585:-
Coord C1 exon
chr10:16413461-16413585
Coord A exon
chr10:16413255-16413377
Coord C2 exon
chr10:16403224-16403379
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGTTTTGATGTCAGATG
3' ss Score
6.46
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AGATATAGACGAGTGCTCCTTCCAGAACATCTGTGTGTTTGGCACATGTCAGAATATTCCAGGAATGTTTCGCTGTATTTGTGATGAGGGGTATGAGCTGGACAGGACAGGTGGAAACTGCACAG
Seq A exon
ATGTGGACGAGTGTCTCGATTCCTTAAACTGTGTTAATGGTCACTGTGAGAACACAGCCGGCTCGTACCAGTGTAACTGTCCTATTGACTTCGAGCTCAATCCTACTGGAATTGGATGCGTTG
Seq C2 exon
ACACCCGGGTTGGAAACTGTTTTCTGGAGGTGGCGTACAATAGTAAGCTGGCATGTAGTGCTGAAATTGGATTTGGAGTCAGTCGTTCCTCATGTTGCTGTTCTCTGGGACGGGTGTGGGGTTACCCATGTGACCACTGCCCTACACTCAACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'42-48,'42-47,43-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=93.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=100.0)
C2:
PF0764510=EGF_CA=PD(0.1=0.0),PF0068312=TB=PU(85.7=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTGCTCCTTCCAGAACA
R:
GGCAGTGGTCACATGGGTAAC
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]