MmuEX6001709 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58056195-58059457:-
Coord C1 exon
chr18:58059335-58059457
Coord A exon
chr18:58058354-58058476
Coord C2 exon
chr18:58056195-58056356
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCATCTGGAATGTTCACAGATA
3' ss Score
4.38
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATTGATGAATGCTCCTTCCAAAATATCTGTGTCTTTGGAACCTGTAACAACTTGCCCGGGATGTTTCACTGTATCTGTGATGATGGTTATGAACTGGACAGGACAGGAGGAAACTGTACAG
Seq A exon
ATATTGATGAGTGCGCAGACCCCATAAACTGTGTCAATGGCCTATGTGTGAACACGCCTGGTCGCTATGAGTGTAACTGCCCGCCTGACTTCCAGCTGAACCCCACTGGCGTGGGTTGCGTTG
Seq C2 exon
ACAACCGCGTGGGCAACTGTTACCTGAAGTTTGGTCCTCGAGGAGACGGGAGTCTGTCCTGCAACACAGAGGTCGGCGTAGGTGTCAGTCGCTCCTCCTGCTGCTGCTCCCTGGGGAAGGCCTGGGGAAACCCCTGTGAGACATGCCCTCCTGTAAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'40-50,'40-49,41-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=97.6)
C2:
PF0068312=TB=PU(85.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGTAACAACTTGCCCGG
R:
GCTGTTTACAGGAGGGCATGT
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types