GgaEX1066036 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55683027-55689792:-
Coord C1 exon
chrZ:55689670-55689792
Coord A exon
chrZ:55689181-55689303
Coord C2 exon
chrZ:55683027-55683188
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGTAGCCTTCCTATTTCAGATA
3' ss Score
8.5
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATATCGATGAATGTTCCTTCCAGAATATATGTGTATTTGGTACCTGTAATAATCTACCAGGAATGTTTCATTGCATCTGTGATGATGGCTACGAACTAGATAGAAGTGGGGGAAACTGTACAG
Seq A exon
ATATTGATGAATGTGCTGATCCCATTAACTGTGTTAATGGTCTTTGTGTAAATACTCCTGGAAGATACGAATGTAATTGTCCTCCAGATTTCCAGCTGAATCCTACTGGAGTGGGTTGTGTGG
Seq C2 exon
ATAATCGTGTTGGCAATTGCTACCTGAAGTATGGACCACGAGGGGATGGAAGCCTATCCTGCAATACTGAAATTGGAGTTGGAGTCAGTCGTTCCTCATGCTGCTGCTCTCTGGGAAAGGCTTGGGGAAACCCATGTGAAACATGTCCCCCTGTAAATAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'42-47,'42-46,43-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=97.6)
C2:
PF0068312=TB=PU(85.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGAATGTTCCTTCCAGAA
R:
CAAGCCTTTCCCAGAGAGCAG
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]