DreEX6097165 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4100845-4103380:-
Coord C1 exon
chr22:4103258-4103380
Coord A exon
chr22:4102905-4103027
Coord C2 exon
chr22:4100845-4101006
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCTATCGTCTCTTTTCCAGACA
3' ss Score
9.32
5' ss Seq
TGGGTACGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ACATTGACGAGTGCAACTTCCAGAACATCTGTGTGTTTGGATCGTGTCAGAATCTGCCAGGAATGTTCCGCTGTGTGTGTGATTATGGATATGAGCTGGACCGCAGCGGAGGAAACTGCACAG
Seq A exon
ACATCAACGAGTGTTTCGACCCGGTGAACTGCATCAACGGTGTGTGTGTGAATCTGCCCGGCAGCTACCTGTGCAACTGTCCTCCAGATTTTGAGCTGAACCCGTCTGGTGTGGGCTGTGTGG
Seq C2 exon
ACACGCGTGTGGGCAACTGTTTCCTGGATACGTTGGACCGTGGCGATGGCGGGATCTCCTGCAGTGCTGAGATCGGAGTGGGCGTGACCCGCGCATCCTGCTGCTGCTCGCTGGGCGGAGCCTGGGGAAACCCCTGTGAACTCTGCCCATCCGTCAACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=100.0)
C2:
PF0764510=EGF_CA=PD(0.1=0.0),PF0068312=TB=PU(85.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGTGTCAGAATCTGCCA
R:
GTTGACGGATGGGCAGAGTTC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]