DreEX6088158 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24726482-24728552:+
Coord C1 exon
chr10:24726482-24726542
Coord A exon
chr10:24728281-24728362
Coord C2 exon
chr10:24728464-24728552
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTGACTTTTCTCGTTTCAGGTG
3' ss Score
11.68
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GAGGTCGTTAGATTCTTGGACACCAAACATATGGATCATTACAAGGTTTTTAATCTCTGCA
Seq A exon
GTGAGAAAGGTTACGATCCAAAGTTCTTTCACTACAGAGTAGAGCGTGTCATGATAGATGACCATAATGTGCCTTCACTGGA
Seq C2 exon
TGATATGCTGCGCTACACCGCCTGTGTCAGAGACTGGATGGCAGCAGACTCCAGGAATGTTATTGCCATCCACTGCAAAGGAGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'11-16,'11-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(15.5=100)
A:
PF0078215=DSPc=FE(20.9=100)
C2:
PF0078215=DSPc=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGTTAGATTCTTGGACACC
R:
CTCCTTTGCAGTGGATGGCAA
Band lengths:
143-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]