MmuEX6034805 @ mm9
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23455457-23456581:+
Coord C1 exon
chr8:23455457-23455517
Coord A exon
chr8:23456291-23456372
Coord C2 exon
chr8:23456493-23456581
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATACGTATTATTTCTCTTAGGTG
3' ss Score
6.86
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GAGGTTGTGCGGTTCCTGGATACCAAGCACCCAAACCACTATCAAGTCTACAATCTATGCA
Seq A exon
GTGAGAGAGCTTATGACCCTAAGCACTTCCACTACAGGGTCCGCAGAATCATGATTGATGATCATAATGTCCCCACTCTTGA
Seq C2 exon
GGAAATGTTGTTGTTCTCCAAGGAAGTAAATAATTGGATGGCTCAAGATCCTGAAAATGTTGTCGCGATTCACTGTAAGGGAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(16.0=100)
A:
PF0078215=DSPc=FE(21.6=100)
C2:
PF0078215=DSPc=FE(24.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTGCGGTTCCTGGATAC
R:
CCTCCCTTACAGTGAATCGCG
Band lengths:
143-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: