DreEX6088164 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24722599-24723127:+
Coord C1 exon
chr10:24722599-24722673
Coord A exon
chr10:24722920-24722997
Coord C2 exon
chr10:24723080-24723127
Length
78 bp
Sequences
Splice sites
3' ss Seq
TAATATGCACATTGGATCAGTAA
3' ss Score
0.37
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CAATACTTGAAATATTCCCGTAAAGATGACGTCTGTGCATTTTAACCCTGGGTTAGATTCCAAAGAAGTTAATGG
Seq A exon
TAATTCGGTGAAGGAAGAGGCAGAGGTGCAGATCGATGATGGAAAGGAAGAAACCAAAGACCCAGACACAATGTACCA
Seq C2 exon
TCAGGTCCGGAAAAAGATAACTCCTTTTGTGATGTCCTTTGGTTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.259 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAATATTCCCGTAAAGATGAC
R:
CGAAAACCAAAGGACATCACA
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]