BtaEX6055993 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21763436-21774200:+
Coord C1 exon
chr12:21763436-21763500
Coord A exon
chr12:21773124-21773184
Coord C2 exon
chr12:21774119-21774200
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCCATCTTTTTTAGGAA
3' ss Score
11.93
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
AGCGTATTATTGCCATGTCATTCCCATCTTCTGGAAAGCAGTCTTTCTACAGGAATCCCATTAAG
Seq A exon
GAAGTTGTGCGGTTCCTGGATACCAAGCACCCAAACCACTATCAAGTTTACAATCTCTGCA
Seq C2 exon
GTGAAAGAGCTTATGATCCTAAGTACTTCCATCATAGGGTCCATCGATACTTGATTGATGATCACAACGTCCCCTCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(3.9=22.7)
A:
PF0078215=DSPc=FE(15.7=100)
C2:
PF0078215=DSPc=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGTCATTCCCATCTTCTG
R:
CTCAGAGAGGGGACGTTGTGA
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]