DreEX6088159 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24726297-24728362:+
Coord C1 exon
chr10:24726297-24726361
Coord A exon
chr10:24726482-24726542
Coord C2 exon
chr10:24728281-24728362
Length
61 bp
Sequences
Splice sites
3' ss Seq
AATCACATTTCATTTTTCAGGAG
3' ss Score
8.52
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AAAGAGTCATCGCCATGTCTTTTCCATCTTCTGGGAAGCAGGCGCTTTATAGGAACCCAATTAGA
Seq A exon
GAGGTCGTTAGATTCTTGGACACCAAACATATGGATCATTACAAGGTTTTTAATCTCTGCA
Seq C2 exon
GTGAGAAAGGTTACGATCCAAAGTTCTTTCACTACAGAGTAGAGCGTGTCATGATAGATGACCATAATGTGCCTTCACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(5.4=31.8)
A:
PF0078215=DSPc=FE(15.5=100)
C2:
PF0078215=DSPc=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATCGCCATGTCTTTTCCA
R:
GTGAAGGCACATTATGGTCATCT
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]