GgaEX6006028 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUX1]
Coordinates
chr1:169796082-169797030:+
Coord C1 exon
chr1:169796082-169796146
Coord A exon
chr1:169796669-169796729
Coord C2 exon
chr1:169796949-169797030
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTCTTGTTACTTCAGGAA
3' ss Score
8.36
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATCGTGTTATTGCAATGTCTTTTCCATCTTCTGGGAAGCAGTCTTTCTATAGGAATCCTATAGAG
Seq A exon
GAAGTTGCGAGATTTTTGGACACCAAGCATGCAGACCACTATAAAGTCTACAATCTTTGCA
Seq C2 exon
GTGAAAAAGGCTATGACCCTAAGTACTTCCACTACAGGGTAGAAAGGATCTTTATTGATGACCACAATGTCCCAGCATTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'14-10,'14-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(4.7=27.3)
A:
PF0078215=DSPc=FE(15.6=100)
C2:
PF0078215=DSPc=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGTCTTTTCCATCTTCTGGG
R:
AATGCTGGGACATTGTGGTCA
Band lengths:
133-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]