DreEX6093208 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41107751-41110383:-
Coord C1 exon
chr11:41110282-41110383
Coord A exon
chr11:41108235-41108363
Coord C2 exon
chr11:41107751-41107879
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTACATCTGTGTGTGTATAGTCT
3' ss Score
6.29
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
CATGTCCAGCGGGTCGCTATGGTCTGGACTGTGCTCATGTGTCAGCGTGTGGGACAGGAGTGAGGAATGATCCGGCTACAGGAAGATGCACTGCACATCAAG
Seq A exon
TCTGTCCTCCAGGTTGGTTTGGTTCTGGCTGTTCTCAGCGTTGTGACTGCAGTAACAGAGGTGTGTGTGACGGAGTCTCTGGAAACTGCTCATGTGCTCTCGGCTGGACCGGCAAACACTGTGATAAAG
Seq C2 exon
AGTGTCCTGATGGCAGCTTTGGGCCTGACTGCTCTCTTCAGTGTTCCTGTCAGAATAACAGCACATGTGACCGAGTGACAGGAAGTTGTCATTGTCGTCCAGGATATTACGGTCATCTGTGTGAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=WD(100=29.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTATGGTCTGGACTGTG
R:
CGTGTTCACACAGATGACCGT
Band lengths:
219-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]