GgaEX7010108 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1026163-1026649:+
Coord C1 exon
chr21:1026163-1026235
Coord A exon
chr21:1026315-1026443
Coord C2 exon
chr21:1026521-1026649
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACTGCGCCCTGTCCTGCAGGCT
3' ss Score
8.97
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGGGCCACGTGCCACCACGTCACCGGGGACTGCCTGTGCCCACCGGGGAGAGTCGGTCCCACTTGTGAGCAAG
Seq A exon
GCTGCCAGCCGCAGCAGTACGGGGTGGGCTGCCTTCAGCCTTGCTCCTGCCTGAACGGAGGGCTGTGCAATGCCACCGATGGGTCCTGCAGCTGCGGGCTGGGATGGACTGGGAAATCCTGCGAGTTAG
Seq C2 exon
AGTGCCCAGCCGGGAGCTTTGGTGCTGACTGCCAGCTGCGCTGTGCCTGCAGGCACAATGCCACCTGCGACCCCACCACCGGCGCCTGCCGCTGCCCCCCGGGACGCTATGGGGCCCTGTGTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'38-46,'38-44,39-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCGGGGACTGCCTG
R:
CTCACACAGGGCCCCATAGC
Band lengths:
180-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]