DreEX6096661 @ danRer10
Exon Skipping
Gene
ENSDARG00000098747 | CU633479.1
Description
NA
Coordinates
chr24:41042553-41044091:-
Coord C1 exon
chr24:41043986-41044091
Coord A exon
chr24:41042699-41042791
Coord C2 exon
chr24:41042553-41042616
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTTGCTCTTCTCAGGGT
3' ss Score
10.04
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCTGGAAAGACTGTGAACACTAAGAGAGTCATTCAGTACTTTGCCAGCATTGCTGCAGGTAGTAGCAAGAAGGACAGCAGCAGTGAAAAGAAG
Seq A exon
GGTACTCTGGAGGATCAAATCATCCAGTGTAATCCTGCTCTGGAGGCTTTCGGGAATGCCAAGACCATCAGGAATGACAATTCATCTCGCTTT
Seq C2 exon
GGCAAATTCATTCGAATACACTTTGCTGCTAGTGGAAAGCTAGCTTCTGCTGATATTGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098747-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCTGGTGCTGGAAA
R:
AGCTAGCTTTCCACTAGCAGC
Band lengths:
151-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]