HsaEX1024722 @ hg38
Exon Skipping
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10543098-10544016:-
Coord C1 exon
chr17:10543902-10544016
Coord A exon
chr17:10543711-10543803
Coord C2 exon
chr17:10543098-10543161
Length
93 bp
Sequences
Splice sites
3' ss Seq
GACTGCTCTTGCCTTTGCAGGGG
3' ss Score
10.67
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTTACTGGTGAGAAGAAGAAGGAAGAAATTACTTCTGGCAAAATACAG
Seq A exon
GGGACTCTGGAAGATCAAATCATCAGTGCCAACCCCCTACTGGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq C2 exon
GGTAAATTCATCAGAATCCACTTTGGCACTACTGGAAAACTGGCATCTGCTGATATTGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414-'10-11,'10-10,12-11
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.9=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCTGGTGCAGGGAA
R:
TCAGCAGATGCCAGTTTTCCA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains