DreEX6097171 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4093973-4096178:-
Coord C1 exon
chr22:4096029-4096178
Coord A exon
chr22:4095219-4095290
Coord C2 exon
chr22:4093973-4094098
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCCGTCTTTTACAGCCG
3' ss Score
11.18
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACATGAGGAAGAGTGTGTGTTACCGTAACTTCAACGACACCTGTGAAAACGAGCTCTCCTTCAACATGACCAAAAAGATGTGCTGCTGCGCCTACAACGTGGGTAAAGCCTGGAACCGGCCCTGCGAGGCCTGTCCTACCCCCGCCACCT
Seq A exon
CCGAATACCAGCTTTTGTGTGGTAATCAGGCTCCTGGTTTCATCATCGACATCCACACTGGAAAACCCATCG
Seq C2 exon
ACATCGACGAGTGTCGCGAGATCCCAGGCATCTGCGCTAACGGCGTCTGCATCAACCAGATCGGCAGTTTCCGCTGCGAGTGTCCCATGGGCTTCAGCTACAACAACATCCTGCTCATCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(0.1=0.0),PF0068312=TB=PU(86.4=74.5)
A:
PF0068312=TB=PD(11.4=20.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(22.6=81.4),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGGGTAAAGCCTGGAAC
R:
CGCAGATGAGCAGGATGTTGT
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]