GgaEX0000270 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:350864-353556:+
Coord C1 exon
chr28:350864-351013
Coord A exon
chr28:351435-351506
Coord C2 exon
chr28:353431-353556
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGTGATGTTCCCCTTCCAGCTG
3' ss Score
10.79
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACATGAGGAAGAGCGTGTGCTATCGTAACTACAATGACACGTGTGAGAACGAGCTCTCCTTCAACATGACCAAGAAGATGTGCTGCTGCTCCTACAACATTGGCAAAGCCTGGAACAAACCGTGTGAGCCCTGCCCTACACCAGCTAGCC
Seq A exon
CTGAGTACCAGATCCTGTGTGGGAACCAGGCCCCTGGCTTTATCATCGACATCCACACAGGGAAGCCCATTG
Seq C2 exon
ATATCGATGAGTGCAGCGAGATCCCTGCTATCTGTACCAATGGTGTCTGCATCAACCAGATTGGCAGCTTCCGCTGTGAGTGCCCCATTGGATTCAGCTACAACAACATACTGCTCATCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_CASSETTE5
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=74.5)
A:
PF0068312=TB=PD(11.4=20.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGATGTGCTGCTGCTCC
R:
AATCCAATGGGGCACTCACAG
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]