DreEX6097180 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4083692-4084534:-
Coord C1 exon
chr22:4084412-4084534
Coord A exon
chr22:4084104-4084235
Coord C2 exon
chr22:4083692-4083817
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACTCAGTCTGTGTTTTCAGACC
3' ss Score
6.87
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
ACATCAACGAGTGTGCGGTGAATCCTCTTCTCTGCGCTTTCCGCTGCGTCAACACCTTCGGCTCATACGAGTGCATGTGTCCAACAGGATATGTGCTGCGTGACGACAACCGCATGTGCAGAG
Seq A exon
ACCAGGACGAGTGCGCTGAAGGTCTGGATGATTGCGCGTCCAGAGGAATGGCCTGCAAAAACCAGATTGGCACCTTTATGTGCATCTGTCCACCCGGCATGACACGACGCCCTGATGGAGAGGGATGCATGG
Seq C2 exon
ATCTGAACGAGTGCCGCAGTAAACCAGGAATCTGCAAGAATGGGCGCTGTGTGAATACGGTGGGCAGTTACCGCTGCGAGTGCAACGAGGGCTTCGAAGCCAGCGCAACAGGCACAGAGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'37-37,'37-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACGAGTGTGCGGT
R:
CACTCTGTGCCTGTTGCG
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]