RnoEX6058871 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53085070-53095506:-
Coord C1 exon
chr18:53095384-53095506
Coord A exon
chr18:53094773-53094904
Coord C2 exon
chr18:53085070-53085195
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTAATGACTGTTTTCTAGATC
3' ss Score
7.71
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ACATCAACGAGTGTGCCCAGAACCCGCTGCTCTGCGCTTTCCGCTGCATGAACACCTTTGGATCCTATGAATGCACATGCCCAGTTGGCTACGCCCTCAGGGAAGACCAAAAGATGTGTAAAG
Seq A exon
ATCTGGATGAATGCGCTGAGGGGCTTCACGACTGTGAGTCCAGAGGCATGATGTGTAAGAATCTGATCGGCACCTTCATGTGCATCTGCCCCCCTGGCATGGCCCGCAGGCCAGACGGAGAAGGCTGCGTAG
Seq C2 exon
ACGAAAACGAATGCAGGACCAAGCCCGGCATCTGTGAAAATGGACGCTGCGTTAACATCATTGGAAGCTACAGGTGTGAGTGCAACGAAGGATTCCAGTCAAGCTCCTCGGGCACCGAATGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'49-54,'49-53,50-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACGAGTGTGCCCAGAA
R:
CCCGAGGAGCTTGACTGGAAT
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]