BtaEX6038504 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18019625-18020982:-
Coord C1 exon
chr7:18020860-18020982
Coord A exon
chr7:18019935-18020069
Coord C2 exon
chr7:18019625-18019750
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAACCCATGGTCACCCACAGATG
3' ss Score
6.03
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACATTGATGAGTGCTCCCTGAACCCCCTGCTCTGTGCCTTCCGCTGCCACAACACCGAGGGCTCCTACGTGTGCACCTGTCCAGTCGGCTATGCGTTACGAGAGGATGGGGCCATGTGCCGAG
Seq A exon
ATGTGGACGAGTGTGCAGACGGTGAGCAAGACTGCCACGCCCGGGGAATGCTGTGCAAGAACCTCATTGGCACTTTCGCCTGCATCTGCCCCCCAGGCATGAGGCCCCAGTCAGGCTCCGGGGAGGGCTGCACAG
Seq C2 exon
ATGATGATGAATGCCGTGCCCAGCCCAGCCCCTGTGCCAACGGCCACTGCATCAACACCGTGGGCAGCTTCCACTGTGACTGTGACGAGGGCTACCAGCCCAGCCCCAGCCTCACCAAGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'55-61,'55-60,56-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGCTCCCTGAACCC
R:
CTGGCACTTGGTGAGGCTG
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]