GgaEX0000274 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:359194-360375:+
Coord C1 exon
chr28:359194-359316
Coord A exon
chr28:359592-359723
Coord C2 exon
chr28:360250-360375
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACCAAACTTTTGGTTGCAGATC
3' ss Score
6.89
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATATTAATGAGTGCGCATCGAATCCTTTGCTTTGTGCCTTCCGCTGCATCAACACCTTTGGCTCCTATGAGTGCACGTGTCCATCTGGATACGCCCTCCGAGATGACAGAAGAATGTGCAGAG
Seq A exon
ATCTGGATGAGTGTGCAGAGGGTCTGCACGACTGCGAGTCTCGAGGAATGCTGTGCAAGAATCTCATTGGCACCTTCATGTGCATCTGCCCACCAGGAATGCAGCGCAGACCTGATGGAGAGGGCTGCACAG
Seq C2 exon
ATGAGAATGAGTGCCGCACCAAGCCTGGAATCTGCCCCAACGGCCGCTGCATCAACACGGTGGGAAGTTACCGCTGCGACTGCAATGAGGGTTTTGAAGTCAGTCCCTCTGGCACAGAGTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_CASSETTE8
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCGCATCGAATCCTTT
R:
TCTGTGCCAGAGGGACTG
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]