DreEX6097824 @ danRer10
Exon Skipping
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10731902-10735238:+
Coord C1 exon
chr22:10731902-10732103
Coord A exon
chr22:10732190-10732464
Coord C2 exon
chr22:10735096-10735238
Length
275 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTATATACCAAAGAGA
3' ss Score
2.53
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTAAATCTTTGATTGCTAACAGTTGTTTCAATGTAGCGTGTGGAACTCGTCCAGTCATGTCTAACCGTATTGTGGGAGGTGAAAACACCCGGCACGGGGAGTTCCCTTGGCAGGTCAGTCTCAGACTACGTGGCCGCCATACCTGTGGAGCATCCATCGTCAACAGCCGCTGGCTCGTCAGCGCCGCCCATTGTTTTGAAGT
Seq A exon
AGAAAACAACCCAAAAGACTGGACAGCTCTTGTGGGTGCCAACCAAGTCAGCGGTGCGGAGGCTGAAGCCTTCATAGTAAACATCAAGTCCCTGGTTATGTCTCCAAAATACGACCCCATGACCACTGACAGTGATGTGACCGTACTGGAGCTGGAAACACCCTTGAAGTTCAGCCATTACGTTCAGCCAGTCTGTATACCATCATCCTCTCATGTTTTCACTCCTGGGCAGAACTGCATAGTATCTGGTTGGGGAGCTCTTAATCAGTACACAA
Seq C2 exon
CTGAAGTGCCTTCCACATTACAGAAGGCAATCGTGAAGATCATTGACTCGAAAGTCTGCAACAAGTCATCTGTATACAGAGGAGCGCTTACACAAAATATGATGTGTGCTGGTTTTCTTCAAGGCAAGGTGGACTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0008921=Trypsin=PU(19.0=64.7)
A:
PF0008921=Trypsin=FE(39.8=100)
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCAGTCATGTCTAACCGT
R:
CTGACAAGAGTCCACCTTGCC
Band lengths:
299-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]