RnoEX6030442 @ rn6
Exon Skipping
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11689045-11691528:-
Coord C1 exon
chr7:11691357-11691528
Coord A exon
chr7:11690020-11690294
Coord C2 exon
chr7:11689045-11689181
Length
275 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTCGGGCCTCCCCAGATT
3' ss Score
6.88
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
ACTGCGGCTGGCAGCCTGCCTGGAGATCAGCTGGAAGGATCGTGGGCGGAGCGGAGGCGGCTCCGGGAGAGTTCCCCTGGCAGGTCAGCCTCCGAGAGAATCACGAACACTTCTGCGGCGCCACCATCATCGGTGCCCGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
Seq A exon
ATTCCAGGACCCTGCGCAATGGGCCGCCCAGGCAGGCAGCGTGCACCTGAGCGGTTCAGAGGCCAGCGCTGTGCGTGCGCGCGTGCTCCGTATCGCCAAGCATCCTGCCTACAACGCGGACACGGCGGACTTTGACGTGGCGGTGCTGGAACTGGCTCGCCCGCTGCCCTTCGGCCGCTATGTGCAGCCTGCCTGCCTTCCCGCGGCCACTCACGTCTTCCCACCGCGCAAGAAGTGCCTGATCTCGGGCTGGGGTTACCTGAAGGAGGACTTCC
Seq C2 exon
TGGTGAAGCCAGAGGTCCTTCAGAAAGCCACAGTGGAATTGCTGGACCAGAACCTGTGTTCCAGCCTGTATGGCCACTCGCTCACGGACAGGATGGTGTGTGCCGGCTACCTGGACGGGAAGGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
PF0008921=Trypsin=FE(40.2=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGAGATCAGCTGGAAG
R:
CTGGCAGGAGTCCACCTTCC
Band lengths:
293-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]