DreEX6098150 @ danRer10
Exon Skipping
Gene
ENSDARG00000004789 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14660973-14672091:-
Coord C1 exon
chr22:14671972-14672091
Coord A exon
chr22:14666280-14666408
Coord C2 exon
chr22:14660973-14661230
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGCCCCGCTGTTGTCCGCAGATC
3' ss Score
10.32
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGTTGGTGCGCAGCTGCCAGGAGCGGAGGTGTCAGTTTGACTGTGTGGTCATGAGAAACGGGACGTCCTGTTTCTGCGGGGAAGGTTTCGAGGTAGACGAGGACGGGAGAAGATGTCGAG
Seq A exon
ATCATGATGAATGCAGGGATTACGGGACATGCAGTCAGATCTGTATGAACACGCAGGGATCGTACAGATGCGCTTGCACAGATGGCTTCAGCCTGCAGGCCAACAGACGATCCTGCAAAGCCAAAACAG
Seq C2 exon
ATCCTGGTGATAAACCTCCGGTTCTGTTGACAACAAATCTGAATTTCATATCAGTTCTTTACCTCAATGGATCAACTATGCCAAATCTCAAGTCCATGGAGACAAATGGGACTCAAATGCTGGACTTTATTTACAGAGAAGAGTCTTTATGTTGGCTGTCGGTGGTGCAGGACACGGGGCAGCTGTGGTGCGCTCGCATGACCAAACTTAAAGGATTTTCAGAAAAACACCAGATACGGATAGGCCAAAACCTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004789-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(79.2=47.5)
A:
PF126622=cEGF=PD(12.5=7.0),PF146701=FXa_inhibition=WD(100=81.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCATGAGAAACGGG
R:
CACCACCGACAGCCAACATAA
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]